Onur Serçinoğlu, PhD

Wageningen University & Research, Wageningen, Netherlands

Gebze Technical University, Bioengineering Department, Gebze, Kocaeli, Turkey

Deputy Head of Department. Member of Bioinformatics and Systems Biology Graduate Program Executive Committee.

Recep Tayyip Erdogan University, Bioengineering Department, Rize, Turkey

Deputy Head of Department.

Marmara University, Bioengineering Department, İstanbul, Turkey

Helmholtz Center for Environmental Research (UFZ), Leipzig, Germany

Environmental Microbiology Department

Marmara University, İstanbul

Bioengineering Department, Computational Biology and Bioinformatics Research Group. Grade: 3.93/4.00

Thesis: "Computational Dynamical Characterization of Human Major Histocompatibility Complex Proteins"

Hamburg University of Technology (TUHH), Germany

Grade: very good (1.5)

Thesis: "Development of a MATLAB-based Tool for Evaluation of Fed-Batch Process Strategies in Mammalian Cell Culture"

Abo Akademi, Turku, Finland

Chemical Engineering

Ege University, İzmir, Turkey

Grade: 79.5/100

TÜBİTAK (1001 programme) · Principal Investigator · 2,350,000 TL

Health Institutes of Türkiye · Researcher

GTÜ · Researcher

GTÜ · Joint Coordinator with M. A. Garstka, XJTU

TÜBİTAK · Scholarship Holder

MSc, Bioengineering, Gebze Technical University

"Rational design of L-alanine dehydrogenase variants for enhanced catalytic efficiency"

MSc, Bioinformatics & Systems Biology, Gebze Technical University

"Computational investigation of potential allosteric ERK5 kinase inhibitors"

MSc, Bioinformatics & Systems Biology, Gebze Technical University

"Computational characterization of ligand specificity and promiscuity of Staphylococcus aureus NorA efflux pump"

MSc, Bioengineering, Marmara University (co-supervisor)

"Development of a software tool for investigation of allosteric communication within protein structures via energy dissipation in molecular dynamics simulations"

Şuara Şahin — MSc, Bioinformatics & Systems Biology, Gebze Technical University

Dilara Önal — MSc, Bioinformatics & Systems Biology, Gebze Technical University

Öyküm Önel — MSc, Bioinformatics & Systems Biology, Gebze Technical University

Emre Taha Çevik — MSc, Bioinformatics & Systems Biology, Gebze Technical University

Bioinformatics Fundamentals, Structural Bioinformatics and Computational Drug Design, Mass and Energy Balances, Fundamentals of Bioengineering

Introduction to Programming with Python

Mathematical Applications in Bioengineering Systems, Biotransport Phenomena, General Biology for Bioengineers Laboratory, Biochemistry for Bioengineers I/II, Bioengineering Laboratory I/II

Next-generation web server for protein energy network analysis of heterogeneous biomolecular systems with LLM-powered natural language exploration of results

Web-based application for exploration and analysis of protein structures using network formalism

Tool for calculation of residue interaction energies and protein energy network analysis of molecular dynamics simulations

XXVII. Ulusal İmmünoloji Kongresi, Bursa Uludağ University, Bursa, Turkey

1st Kocaeli International Engineering, Natural Sciences and Health Technologies Conference (MDST 2024), Kocaeli Health and Technology University, Kocaeli, Turkey

9th International BAU Drug Design Congress, Bahçeşehir University, Istanbul, Turkey

Editorial Board Member, Scientific Reports (Nature Portfolio)

TEV/DAAD Germany Master's Scholarship (Scholarship)

IAESTE Scholarship (Internship)